ICHEC Software
Information about software packages installed on the ICHEC systems.
BioPerl
Versions Installed
Stokes: 1.6.0
Description
BioPerl is a toolkit of perl modules useful in building bioinformatics solutions in Perl. It is built in an object-oriented manner so that many modules depend on each other to achieve a task.
Only the core modules in BioPerl are supported on ICHEC systems.
License
BioPerl is dually-licensed under the terms of the Perl Artistic License or the GNU GPL.
Benchmarks
N/A.
Additional Notes
To use BioPerl, load the relevant environment module:
More information can be obtained from http://www.bioperl.org
How to cite BioPerl:
Stajich J.E., Block D., Boulez K., Brenner S.E., Chervitz S.A., Dagdigian C., Fuellen G., Gilbert J.G., Korf I., Lapp H., Lehväslaiho H., Matsalla C., Mungall C.J., Osborne B.I., Pocock M.R., Schattner P., Senger M., Stein L.D., Stupka E., Wilkinson M.D. and Birney E. (2002)
The Bioperl toolkit: Perl modules for the life sciences.
Genome Research 12(10): 1611-1618.