Information about software packages installed on the ICHEC systems.
PHYLIP (the PHYLogeny Inference Package) is a package of programs for inferring phylogenies (evolutionary trees). Methods that are available in the package include parsimony, distance matrix, and likelihood methods, including bootstrapping and consensus trees. Data types that can be handled include molecular sequences, gene frequencies, restriction sites and fragments, distance matrices, and discrete characters.
PHYLIP is freely available to all users. Please refer to Copyright Notice for PHYLIP for more details.
To use PHYLIP load the relevant environment module:
Further information can be obtained from evolution.genetics.washington.edu/phylip.html.
How to cite PHYLIP:
Please refer to the PHYLIP FAQ for citation details.