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ICHEC Software

Information about software packages installed on the ICHEC systems.

PHYLIP

Versions Installed

Stokes: 3.69

Description

PHYLIP (the PHYLogeny Inference Package) is a package of programs for inferring phylogenies (evolutionary trees). Methods that are available in the package include parsimony, distance matrix, and likelihood methods, including bootstrapping and consensus trees. Data types that can be handled include molecular sequences, gene frequencies, restriction sites and fragments, distance matrices, and discrete characters.

License

PHYLIP is freely available to all users. Please refer to Copyright Notice for PHYLIP for more details.

Benchmarks

N/A.

Additional Notes

To use PHYLIP load the relevant environment module:

module load phylip

Further information can be obtained from evolution.genetics.washington.edu/phylip.html.

How to cite PHYLIP:

Please refer to the PHYLIP FAQ for citation details.

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