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ICHEC Software

Information about software packages installed on the ICHEC systems.

R

Versions Installed

Fionn: 3.0.2 / 3.1.1

Description

R is a language and environment for statistical computing and graphics. It provides a wide variety of statistical (linear and nonlinear modelling, classical statistical tests, time-series analysis, classification, clustering, ...) and graphical techniques, and is highly extensible. The S language is often the vehicle of choice for research in statistical methodology, and R provides an Open Source route to participation in that activity.

License

R is free software distributed under a GNU-style copyleft.

Benchmarks

N/A.

Additional Notes

To use R on Fionn load the environment module using below command.

module load apps R/intel/3.0.2

module load apps R/intel/3.1.1

On Stoney, use below module command.

module load R

Further information can be obtained at The R Project for Statistical Computing.

Job Submission example on Fionn

#!/bin/bash
#PBS -l nodes=1:ppn=24
#
#PBS -l walltime=01:00:00
#PBS -N MyJobName
#PBS -A MyProjectName
#Join stdout and stderr
#PBS -j oe

#Load the R module
module load apps R/intel/3.0.2

cd $PBS_O_WORKDIR

R --no-save < script.R

Example script.R

XX <- rnorm(10000,10.0,2.0)
XX[500]
save(XX,file='Ex.Rdata')

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