Research

Expired Research Projects

Expired Project Breakdown

The following graph shows the number of expired projects (Full National Service and National Capability Service) per scientific field and per application class (to see the list of projects which are active, please go to this page):

Chemistry (29)	1 18 10	Class A (3) Class B (56) Class C (128)
Computer science (24)	0 5 19
Earth sciences (11)	0 4 7
Engineering (19)	0 5 14
Life sciences (52)	0 12 40
Physics (35)	2 11 22
Others (17)	0 1 16

Expired research projects per application class & scientific field

Class A Projects

There are currently 3 expired Class A projects:

Code	PI	Title
tcphy003a	Prof. Stefano Sanvito	Transport properties of organic macromolecules: modeling at the boundaries between biology and nano-electronics
tcphy004a	Prof. Stefano Sanvito	Theory of ferromagnetism in diluted and defective oxides
tiche011a	Dr. Damien Thompson	Faster, bigger, better: supra-nanoscale molecular dynamics for nanoelectronics

Class B Projects

There are currently 56 expired Class B projects:

Code	PI	Title
dccom006b	Prof. Heather Ruskin	Large-scale multi-agent simulations of the immune response to HIV infection
dccom007b	Dr. Michael Scott	Finding Cryptographic Pairing-friendly elliptic curves
dccom008b	Dr. Mary Hearne	Data-Oriented Models of Parsing and Translation
dccom019b	Dr. Patrik Lambert	Optimising Hybrid Machine Translation
ndche002b	Dr. Niall English	Effects of Electromagnetic Fields on Proteins
ndear002b	Dr. Steffen Abe	Parallel 3D DEM simulation of dynamic rupture of a rough earthquake fault
ndear003b	Dr. David Fitzpatrick	A Fungal Phylogeny Based on 42 Complete Genomes Derived From Supertree and Combined Gene Analysis.
ndear006b	Prof. Peter Lynch	Simulating Climate Change in Ireland: Implications for Wind Energy.
ndeng002b	Dr. Marco Grimaldi	Evaluation of novel features
ndlif006b	Prof. Paul McKeigue	Statistical methods for admixture mapping and modelling extended haplotypes
ndlif007b	Dr. Dominic Zerulla	Simulations of Macromolecule-Nanoparticle Interactions
ndlif008b	Dr. Kate Johnston	A search for novel amino acid motifs in protein-protein interactions required for pathogenesis.
ndlif010b	Dr. David Fitzpatrick	Searching for Evidence of Interkingdom Horizontal Gene Transfer between Bacteria and CTG species
ndphy001b	Dr. Ronan McNulty	Starting to Simulate the High Energy Frontie
ndphy004b	Dr. Zoltan Neufeld	Aggregation and collective motion of microorganisms in fluid flows
ngche003b	Prof. John Simmie	Towards a World Class Combustion Chemistry Centre
ngche005b	Prof. John Simmie	BurnQuest: Towards a World Class Combustion Chemistry Centre
ngcom001b	Dr. Michael Madden	Kernel Methods for Machine Learning with Application to the Analysis of Raman Spectra
ngear001b	Dr. Marcel Cure	Hydrodynamic Model of Irish Shelf Waters using ROMS
ngeng002b	Prof. Peter McHugh	3D Modelling of the mechanical behaviour of Cardiovascular Stents
ngeng007b	Dr. Patrick McGarry	Modelling the active evolution of focal adhesions and stress fibres in cells as a result of mechanical stimuli
ngeng012b	Dr. Noel Harrison	A FINITE ELEMENT ANALYSIS OF THE MICROSCALE FORCES THAT DRIVE CELL-DERIVED TISSUE FORMATION: A TISSUE ENGINEERING SOLUTION
nglif002b	Dr. Denis O'Mahoney	Large scale high resolution study of the trabecular bone in vertebral bodies.
nglif004b	Prof. Peter McHugh	High Resolution Modelling of Bone Loss in Vertebral Trabecular Bone
ngphy003b	Dr. Dmitriy Ivanov	Computational and Experimental Investigation of Sub-Wave Nano-Structuring on Metals with Femto- and Attosecond Laser Sources
nmlif004b	Dr. James McInerney	The Tree of one hundred percent
tcche004b	Dr. Natasha Galea	QM/MM Study of Isolated Surface Defects on Ceria
tcche005b	Prof. Graeme Watson	DeNOx catalysis on Ceria Surfaces
tcche006b	Dr. Benjamin Morgan	Electronic structure studies of the defect chemistry of TiO2
tcche007b	Prof. Graeme Watson	Optimisation of Ionic Conductivity in Intermediate Temperature Solid Oxide Fuel Cells
tclif003b	Dr. Gemma Kinsella	Investigating the conformational dynamics of the Glucocorticoid Receptor
tclif004b	Dr. Gemma Kinsella	Investigating ligand interactions with the Estrogen receptor α and β
tcphy001b	Prof. Stefano Sanvito	Transport Properties of nanoscale devices: A proposal to the Irish Centre for High End Computing
tcphy005b	Prof. Stefano Sanvito	Simulating Electronic Transport in Scanning Tunneling Microscopy
tiche001b	Dr. Simon Elliott	Electronic structure of dielectric materials
tiche002b	Dr. Damien Thompson	Simulation of molecular printboards for nanopatterning
tiche003b	Dr. Damien Thompson	Simulating the Behaviour of Organic Macromolecules at the Liquid-Liquid Interface
tiche004b	Dr. Michael Nolan	Controlling Catalysis on TiO2 Surfaces: an Ab Initio Approach
tiche005b	Dr. Michael Nolan	First principles materials design of transparent conducting oxides
tiche006b	Dr. Michael Nolan	Metal Oxide Surfaces and Interfaces: at the Frontier of First Principles Simulations
tiche007b	Dr. Damien Thompson	Computer simulations of nanopatterning systems
tiche008b	Dr. Andreas Larsson	Doped fullerenes and peapod nanotubes - a first-principles investigation
tiche009b	Dr. Simon Elliott	Growth of rare earth metal oxides as high-k dielectrics
tiche010b	Dr. Michael Nolan	First Principles Simulations of Shape Memory Alloys Based on NiTi
tiche012b	Dr. Damien Thompson	Faster, bigger, better: supra-nanoscale molecular dynamics for nanoelectronics
tilif001b	Dr. Damien Thompson	CODEX: A multi-disciplinary approach to engineer the genetic code
tilif002b	Dr. Damien Thompson	Design of novel Ellipticine Kit kinase inhibitors
tiphy001b	Dr. Geoffrey Stenuit	Electronic transport and vibrational properties in dilute GaAs:N
tiphy002b	Dr. Giorgos Fagas	Electronic Structure and Transport Properties of Molecules and Nanowires
tiphy004b	Dr. Sian Joyce	First Principles Predictions of Nuclear Magnetic Resonance J-Coupling
tiphy005b	Dr. Giorgos Fagas	Band Gap Modification in Semiconductor Nanowires
tiphy007b	Dr. Jim Greer	Atomic scale model interfaces between high-k silicates and germanium
ucast003b	Dr. Mark Hannam	Gravitational-wave astronomy from black-hole collisions
uceng001b	Dr. Liam Marnane	Analysis of new Low Density Parity Check Codes
uclif002b	Dr. Charles Spillane	Identification of orphan (ORFan) genes in fully sequenced genomes of higher eukaryotes.
ucphy002b	Dr. Michael Flynn	Timing and Amplitude Jitter of Passively Mode-locked Quantum-Dot Semiconductor Diode Lasers

Class C Projects

There are currently 128 expired Class C projects:

Code	PI	Title
cslif001c	Dr. Jim Kennedy	Analysis of effect of adding bone-graft to plate fixation of proximal humeral fractures
cslif002c	Dr. Heinrich Huber	Cellular Automaton based reaction-diffusion-modeling from single cell imaging time series
dcche001c	Dr. Pavle Mocilac	Molecular modelling and ab initio calculations benzamides and pyridinecarboxamides.
dcche002c	Dr. Sarah Kebbell	Synthesis and DFT calculations of 1,2,3,5-tetrazocines
dccom001c	Dr. Nicolas Stroppa	Data-driven Machine Translation
dccom002c	Prof. Heather Ruskin	Large-scale mutli-agent simulations of the immune response to HIV infection.
dccom003c	Dr. Djame Seddah	Parsing the British National Corpus (100M Words) with Automatically Acquired Deep probabilistic LFG Resources
dccom004c	Dr. Mary Hearne	Combining Linguistics, Statistics and Examples: Data-Oriented Translation
dccom005c	Dr. Michael Scott	Finding Cryptographic Pairing-friendly elliptic curves.
dccom009c	Dr. Mary Hearne	Exploiting Parallel Treebanks to Improve Data-Driven MT
dccom010c	Dr. Mary Hearne	Large-Scale Statistical Machine Translation
dccom011c	Prof. Barry McMullin	Evolving Cell Signalling Networks in silico: Role of Network "Closure"
dccom012c	Dr. Patrik Lambert	Intrinsic and Extrinsic Word Alignment Tuning
dccom013c	Dr. Deirdre Hogan	TREC-2008 Blog Track - Parsing for Sentiment Analysis
dccom014c	Dr. Jinhua Du	Large-scale Hybrid Machine Translation Model and Distributed Language Model Training
dccom015c	Dr. Jinhua Du	Optimising Statistical Machine Translation
dccom016c	Dr. Michael Scott	Attacking the McEliece cryptosystem.
dccom017c	Dr. Patrik Lambert	Baseline Discriminative Word Alignment System
dccom018c	Dr. Lamia Tounsi	Arabic Treebank-Based LFG parsing
dccom022c	Mr. Sergio Penkale	Fragment Rescoring for Data-Oriented Translation
dccom023c	Dr. Michael Scott	ECC2K-130
dchum001c	Dr. Djame Seddah	Inducing Wide Coverage LFG Grammar from a very large subset of the English Wikipedia
dclif001c	Dr. Mary O'Connell	Phylogenetics of mammalian peroxidases
dclif002c	Dr. Mary O'Connell	Evolution of mammalian reproductive proteins.
dclif003c	Dr. Mary O'Connell	Resolution of the phylogeny of hydrogenases
dclif004c	Ms. Noeleen Loughran	Evolution of mammalian reproductive proteins
dclif005c	Mr. Thomas Walsh	Evolution of Tissue Specific Genes
dclif006c	Dr. Colin Clarke	Application of machine learning and gene selection methods for whole genome microarray analysis of breast cancer.
dclif007c	Dr. Mary O'Connell	Evolutionary Analysis of the Fanconi Anemia pathway
dclif008c	Ms. Noeleen Loughran	The evolution of genomic imprinting
dclif010c	Mr. Mark Lynch	Analysis of sequence patterns from surface layer proteins isolated from different strains of C. difficile
dclif012c	Mr. Mark Lynch	Analysis of sequence patterns from surface layer proteins isolated from different strains of C. difficile.
dsast001c	Dr. Paul Dempsey	Particle Acceleration at Relativistic Shocks
dsast003c	Dr. Gareth Murphy	PIC simulations of near and mildly relativistic shocks
dsast004c	Dr. Jose Gracia	OpenSESAMe - A tool for automated synthetic observations
dsear001c	Dr. Estelle Roux	Joint Inversion of Magnetotelluric and Surface-wave Data in an Anisotropic Earth
dsphy001c	Dr. Subrata Bal	Simulating Noncommutative Yang Mills Gauge Theory on Fuzzy Manifolds
icast001c	Mr. Alastair McKinstry	Impact modeling of ocean planets using ZEUS Initial software development and benchmarking
icast002c	Dr. Andy Shearer	Numerical Simulations of Cataclysmic Variable Systems to create
icast003c	Mr. Alastair McKinstry	Tidally-driven oceanic circulation of exoplanets
icphy001c	Dr. JC Desplat	A study of 3-D binary fluid mixtures under shear
icphy002c	Dr. Andy Shearer	Simulations of radiation transport using Penelope
iteng001c	Dr. Brendan McCormack	Finite element modelling of skin wrinkling
meear001c	Mr. Ray McGrath	Hirlam
ndast001c	Mr. Alex Byrne	Particle Acceleration In A Turbulent Magnetic Field
ndche001c	Dr. Niall English	Effects of Electromagnetic Fields on Proteins
ndche003c	Dr. Andrew Phillips	In silico evaluation of NacNac transition metal catalyst precursors
ndear001c	Dr. David Fitzpatrick	Comparative genomics of pathogenic Candida species and a supertree analysis of 43 fungal genomes
ndear004c	Prof. Peter Lynch	COSMO-WINDS
ndear005c	Dr. Rodrigo Caballero	Numerical simulation of extreme European storms
ndeng001c	Dr. Marco Grimaldi	Evaluation of novel features in speaker identification
ndlif001c	Dr. Kate Johnston	A preliminary search for novel motifs involved in bacterial - pathogen interactions.
ndlif002c	Dr. Richard Edwards	Large scale prediction of protein-protein interaction motifs in yeast
ndlif003c	Prof. Denis Shields	High throughput discovery of protein-protein interaction mediating short, linear motifs in mammals
ndlif004c	Dr. Ivan Baran	Pharmacophore modelling of short peptide motifs and their similarity to drugs.
ndlif005c	Dr. Dominic Zerulla	Simulations of Macromolecule-Nanoparticle Interactions
ndlif009c	Dr. Peadar O'Gaora	Biomarker identification from large biological datasets
ndlif011c	Dr. Fergal Casey	Investigation of peptide docking profiles against peptide binding domains as a indicator of similar bioactivity.
ndlif013c	Dr. Michael Bekaert	Adaptive evolution of vision in Bats
ndlif014c	Prof. Brendan Loftus	Genome assembly using short reads from next generation sequencing platform.
ndlif015c	Dr. Norman Davey	High throughput discovery of short, linear motifs
ndmat001c	Dr. Zoltan Neufeld	Aggregation and collective motion of microorganisms in fluid flows
ndmat002c	Dr. Zoltan Neufeld	Collective search strategies in turbulent flows
ndmat006c	Dr. Scott Rickard	Enumeration of Costas arrays of order 28
ndphy002c	Dr. Zoltan Neufeld	Aggregation and collective motion of microorganisms in fluid flows
ndphy003c	Dr. Nicolae-Viorel Buchete	Multiscale Study of Molecular Aggregation Processes
ndphy005c	Mr. Ronan Murphy	All-atom Simulations of Protein Folding Processes
ndphy006c	Mr. Ronan Murphy	Multiscale Study of Protein Folding Processes
ndphy007c	Mr. Cathal Leahy	Study of Conformational Changes in Short Peptides
ndphy008c	Ms. Florentina Tofoleanu	Structural and energetic properties of Alzheimer’s A-beta amyloid fibrils
ndphy009c	Dr. Nicolae-Viorel Buchete	Multiscale Study of Molecular Aggregation Processes
ngche001c	Prof. John Simmie	Creation of World Class Combustion Chemistry Centre
ngche002c	Dr. Maria Navarro	Quantum mechanical computations applied to thermochemistry calculations
ngche004c	Dr. Catherine Hayes	Investigation into the relationship between sweet taste and binding energies using classes of sweet compounds & 5 homology modelled taste receptors.
ngche006c	Dr. Patrick O'Leary	Modeling of silica surface interactions with transition metal catalysts
ngear002c	Dr. Saji Varghese	Impact of aerosols and chemical transport on the climate of Western Europe
ngeng001c	Prof. Peter McHugh	Scalability of Size Effects in Small Metallic Cardiovascular Devices
ngeng003c	Dr. Nathan Quinlan	Computational fluid dynamics simulations of turbulent flow in prosthetic heart valves
ngeng004c	Dr. Nathan Quinlan	Characterising the fluid dynamics and particle trajectories in anatomically realistic airway bifurcations at multiple breathing frequencies and flow rates
ngeng005c	Dr. Patrick McGarry	Modeling the evolution of the cellular actin cytoskeleton
ngeng006c	Dr. Indiana Olbert	PRISM - Predictive Irish Sea Models
ngeng008c	Dr. Senan Cahill	Finite Element Analysis of the Mechanical Properties of Bone Tissue Engineering Scaffolds fabricated using Rapid Prototyping Techniques
ngeng009c	Dr. Noel Harrison	A FINITE ELEMENT ANALYSIS OF THE MICROSCALE FORCES THAT DRIVE CELL-DERIVED TISSUE FORMATION: A TISSUE ENGINEERING SOLUTION
ngeng010c	Prof. Peter McHugh	Development of Discrete Finite Element Cell Model
ngeng013c	Dr. Michael Hartnett	Development of Coupled Ocean-Atmosphere Climate Model
nglif001c	Dr. Denis O'Mahoney	Parallel Methods for Finite Element Solution of Voxel Generated Meshes of Trabecular Bone – MPI Implementation
nglif003c	Dr. Aaron Golden	Novel methods for annotating metagenomic assemblies using the Self Organising Map (SOM)
nglif005c	Dr. Aaron Golden	Characterising co-regulated transcription factors associated with in-vivo CTCF binding genomewide
nglif006c	Dr. Aaron Golden	Novel Binding Site Motifs associated with Imprinted Genes in Human and Mouse
ngmat001c	Prof. Ted Hurley	Dihedral Codes
ngphy001c	Prof. Michael Conneely	Calculation and Classification of Multiply Excited States
ngphy002c	Dr. Dmitriy Ivanov	Computational and Experimental Investigation of Sub-Wave Nano-Structuring on Metals with Femto- and Attosecond Laser Sources
nmcom001c	Dr. Victor Lazzarini	Parallel Implementation of Csound 5
nmcom002c	Dr. Diarmuid O'Donoghue	Genetic Repair in Genetic Algorithms
nmear001c	Dr. Rowan Fealy	Dynamical Regional Climate Modelling for Ireland employing the Weather Research Forecasting (WRF) regional climate model
nmlif001c	Dr. James Cotton	Understanding the Origins of Eukaryotic Genes and Genomes
nmlif002c	Dr. James McInerney	The Tree of one hundred percent
nmlif003c	Dr. Davide Pisani	INFERRING THE EUKARYOTIC TREE OF LIFE USING PARTIAL GENOMES
nmlif005c	Dr. Davide Pisani	INFERRING THE EUKARYOTIC TREE OF LIFE USING PARTIAL GENOMES: METHODOLOGICAL ASPECTS
nmlif006c	Dr. James McInerney	Evolution of metabolism in Escherichia coli and its relatives
nmlif008c	Dr. James McInerney	Metabolic Network Evolution in Escherichia coli and relatives
nmphy001c	Dr. Jiri Vala	Diagonalization of large sparse matrices using a relaxation method
tcast001c	Dr. Cian Crowley	Radiative Transfer in the Atmospheres of Cool Giant Stars
tcche001c	Dr. Justine Taylor	A Molecular Dynamics Benchmark Study: Infiniband vs. Gigabit Ethernet Performance
tcche002c	Prof. Graeme Watson	Electronic Structure Studies of Transparent Semiconductors
tceng001c	Dr. Craig Meskell	Investigation of fluid forces responsible for fluid elastic instability in tube arrays.
tceng002c	Dr. Kevin O'Kelly	Modeling of indentation fracture in polycrystalline, multi-phase ceramics
tclif001c	Dr. Gemma Kinsella	Investigating the role of selective dopamine D1-like receptor signalling.
tclif002c	Dr. Gemma Kinsella	Development of Antagonist Induced Conformations of the Androgen Receptor
tclif005c	Dr. Jeffrey Mower	Assembly of mitochondrial genomes from whole genome sequencing projects
tcphy002c	Dr. Mauro Ferreira	Numerical studies of carbon nanotube / polymer composites
tcphy006c	Dr. Claude Ederer	Exploring new functionalities in complex oxides
tcphy009c	Mr. Luiz Pereira	Charge transport across disordered carbon nanotube networks
tcphy010c	Dr. Claude Ederer	Exploring new functionalities in complex oxides
tiphy003c	Dr. Sian Joyce	First principles predictions of nuclear magnetic resonance J-coupling
tiphy006c	Dr. Jim Greer	Atomic scale model interfaces between high-k silicates and germanium
ucast001c	Dr. Mark Hannam	Gravitational waves from black-hole binary collisions
ucast002c	Dr. Mark Hannam	Gravitational waves from black-hole binary collisions
uclif001c	Dr. Charles Spillane	Identification of orphan (ORFan) genes in fully sequenced genomes of higher eukaryotes.
uclif003c	Dr. Pavel Baranov	Simulation of the triplet genetic code evolution
uclif004c	Dr. Daniel Falush	Application of copying model approach to Helicobacter pylori.
uclif005c	Dr. Pavel Baranov	Identification of indel RNA editing patterns in the human genome
uclif006c	Dr. Charles Spillane	Identifying Taxon Restricted Genes in Higher Plants
ucmat001c	Dr. Kingshuk Roy Choudhury	Analysis of wave field images
ucphy001c	Dr. Michael Flynn	Intensive Numerical Simulation of Quantum-Dot Semiconductor Diode Laser Dynamics
ucphy003c	Dr. Maria Elena Grillo	Charge retention in SONOS non-volatile memory devices: oxide-nitride interfaces and deposition process
uleng001c	Prof. Noel O'Dowd	Effect of residual stress/strain on high temperature creep of polycrystals: A multiscale finite element analysis
ulphy001c	Dr. Zakia Rahman	Multi scale Modelling of Rare Earth Doped Nanowires

Cosmogrid Projects

Between the September 1st, 2005 and the decommissioning of the Walton and Hamilton services in December 2008, 42 Cosmogrid research projects were approved.

Code	PI	Title
cg001	Dr. Mark Eric Dieckmann	Large-scale particle-in-cell simulations of ultrarelativistic two stream instabilities
cg002	Dr. Padraig O'Connor	Investigating Pulsars
cg003	Mr. Sean Corkery	The Stability of Rotating Jets: Numerical Simulations.
cg004	Ms. Daniela Pandolfi	map an model crustal damages
cg005	Mr. Szymon Gladysz	A model of the eclipse shadow bands formation
cg006	Dr. Sebastien Leygnac	Radiation in astrophysical shocks
cg007	Mr. Ray McGrath	Climate Modelling
cg008	Dr. Edouard Audit	Radiation-hydrodynamics for Jets
cg009	Dr. Gareth O'Brien	Seismic source modelling and wave propagation in volcanoes
cg010	Mr. Stephen Bourke	Searching for Binary Pulsars
cg011	Mr. Gregg Hallinan	Development of a Parallel, Fully Relativistic, 3-Dimensional, Particle-in-Cell Code to Model Electron Cyclotron Maser Emission from Brown Dwarfs
cg012	Dr. John MacDonald	Large scale Modular 3D Relativistic, Fully Parallel Simulation of a Pulsar Magnetosphere using P.I.C methodology.
cg013	Dr. Andrea Ciardi	A Laboratory Astrophysics Investigation of Jets
cg014	Dr. Ivan Lokmer	Moment-tensor inversion for the long-period seismic sources before the Mt. Etna 2004 eruption
cg015	Mr. Brian Clayton	Parallel Approximate Finite Element Inverse Preconditioning on Distributed Systems
cg016	Mr. Brian Reville	MHD wave excitation in astrophysical shocks
cg017	Dr. Thibaut Lery	Star formation simulations
cg018	Dr. Gareth Murphy	Modelling Astrophysical Jets
cg019	Mr. Anthony Moraghan	A new study of Magnetohydrodynamic jets
cg020	Dr. Fabio De Colle	Jet Simulations using a shared memory system
cg021	Dr. Alex Rosen	Initialisation of molecular ZEUS-3D on hamilton
cg022	Dr. Celine Ravaut	Full waveform inversion for geophysical imaging
cg023	Mr. Andrew Cunningham	Protostellar Outflow Driven Turbulence
cg024	Dr. James MacDonald	Discrete Dipole Approximation Scattering Simulation
cg025	Ms. Anna Avdeeva	CosmoGrid
cg026	Dr. Stephen O'Sullivan	Multifluid simulations of dense molecular clouds
cg027	Dr. Dmitry Avdeev	geoelectromagnetic modelling and inversion in three dimensions
cg028	Dr. Brian Espey	Understanding mass loss in stars like the Sun
cg029	Dr. Andrew Lim	Simulations of Magnetically Dominated Regions of The ISM
cg030	Dr. Brian Coghlan	Evaluating SMG on a real SMP
cg031	Dr. Jose Gracia	Large-scale simulations of jets
cg032	Dr. Conor Masterson	Monte Carlo simulations of very high energy gamma-raysources for H.E.S.S.
cg033	Dr. Andrea Mignone	Cooling and heating processes in Herbig-Haro jets
cg034	Dr. Stephen O'Sullivan	Transport properties of relativistic particles in the turbulent magnetic fields of radio galaxy lobes
cg035	Mr. Tobias Cornelius Hinse	N-Particle Dynamics and Mapping of Phase-Space Topology of Jovian Irregular Satellite Systems
cg036	Dr. Stephen O'Sullivan	Transport of cosmic rays in self-excited magnetic turbulence
cg037	Dr. Sarah Tanner	Multifluid Dynamo Simulations
cg038	Mr. Jonathan Mackey	Radiative Transfer Effects on the Interstellar Medium (Code Development and Testing)
cg039	Prof. Alan Jones	Development of a new 3D magnetotelluric inversion program and its application to the Southern African Magnetotelluric Experiment data
cg040	Mr. Jamie O'Sullivan	JETSET - Molecular Cooling effects in Protostellar Jet propagation
cg041	Mr. Alex Byrne	Particle Acceleration In A Turbulent Magnetic Field
cg042	Mr. John Sheehan	Analogue modelling simulations

Transitional Service

Between September 1st, 2005 and May 31st, 2006, 73 Transitional Service projects were approved:

Code	PI	Title
cslif001	Dr. Anthony J. Chubb	Computer-Aided Design of Novel Anti-Thrombotic Agents
cslif002	Dr. Edelmiro Moman	Rational Design of Selective Inhibitors of the Two Catalytic Sites of Prostaglandin Endoperoxide Synthase.
dcche001	Mr. William Henry	Interaction of Ru Polypridyls With Carbon Nanotubes.
dceng001	Dr. Caitriona Lally	An investigation into the influence of cardiovascular stent design on arterial stresses and in-stent restenosis using the finite element method
icear001	Dr. Gerard Gorman	Parallel unstructured adaptive mesh method for three-dimensional range-of-scale ocean modelling
iclif002		Structural Refinement Studies of the Nicotinic Receptor
icphy001	Dr. JC Desplat	A study of 3-D binary fluid mixtures under shear
ndche001	Dr. Maxim Fedorov	In silico study of conformational and thermodynamical properties of self-assembled structures formed by rationally designed oligopeptides.
ndeng001	Dr. Scott Rickard	Enumeration of 27-by-27 Costas arrays
ndlif001	Dr. Jens Nielsen	Re-Designing protein pKa values
ndlif002	Dr. Matthew Sullivan	Analysis of proteomics mass spectum data for dynamic modifications
ndlif004	Prof. Paul McKeigue	Modelling genetic admixture in human populations
ndlif005	Dr. Gianluca Pollastri	Towards improved ab initio prediction of protein structures through accurate residue contact map prediction
ndlif006	Mr. Gordon Blackshields	Parameter optimisation and over-optimisation in multiple sequence alignment
ndlif007	Dr. David Fitzpatrick	Comparative genomics of pathogenic Candida species
ndlif008	Mr. Iain Wallace	Designing a Multiple Domain Database for benchmarking multiple sequence aligment methods
ndlif009	Mr. Ian Jeffery	Comparison and evaluation of microarray feature selection methods.
ndmat001	Ms. Laura Kirwan	Simulation study to test the reliability of a Taylor Series approximation to the standard errors of predicted proportions resulting from an RGRD analysis
ndphy001	Dr. Ronan McNulty	Resource discovery for particle physics simulations
ndphy002	Dr. Dominic Zerulla	Surface Plasmon Polaritons on Tuneable Nanostructures for the Detection of Conformational Changes in Proteins
ngast001	Dr. Matt Redman	Inhomogeneous accretion flows and massive star formation
ngche001	Prof. John Simmie	Towards a World Class Combustion Chemistry Centre
ngcom001	Dr. Michael Browne	Optimising external computation for Euro50 integrated model
ngear001	Dr. Colin Brown	Multibeam acoustic backscatter modelling in the marine environment
ngear002	Dr. Michael Hartnett	Predictive Irish Sea Model
ngear003	Mr. Martin Kenirons	Tectonic studies in bathymetric data
ngeng001	Dr. Denis O'Mahoney	Parallel Element by Element Solution of Voxel Generated Finite Element Meshes of Trabecular Bone
ngeng002	Mr. Frank Harewood	Microscale modelling of the mechanical behaviour of Cardiovascular Stents
ngeng003	Dr. Noel Harrison	Finite Element Mesh Generation and Postprocessing from CT scans of Trabecular Bone
ngeng004	Dr. Xiaochuan You	Microscale modelling of the wear behaviour of thin self-lubricating coatings
ngeng005	Mr. Daniel Ilie	Testing and Modelling to Determine Size Effects in Small Metallic Cardiovascular Devices
ngeng006	Dr. Noel Harrison	Computational modelling of Trabecualr Bone using ABAQUS
ngeng007	Mr. Brendan Flaherty	A continuum finite element model predicting cell motility
ngeng008	Mr. Liam Mullins	Characterisation of the Fracture Behaviour of Cortical Bone
ngeng009	Dr. Nathan Quinlan	Large Eddy Simulation of Turbulent Wind Loading on an Extremely Large Telescope
ngeng010	Mr. Kevin Heraty	Characterising the fluid dynamics and particle trajectories in anatomically realistic airway bifurcations
nghum001	Dr. Michael McGettrick	Markovian Structures in Irish music
nglif001	Dr. Aaron Golden	Identification of Transcription Factor Binding Sites Associated with Imprinted Genes in Human using SOMBRERO
nglif002	Mr. Shaun Mahony	Comparing the performance of motif-finders in a model genome
nglif003	Dr. Aaron Golden	Characterising ChIP-chip derived CTCF binding site motifs Genomewide
ngmat001	Dr. Goetz Pfeiffer	COMPUTING SUBGROUPS OF ALMOST SIMPLE GROUPS.
ngphy001	Dr. Dmitriy Ivanov	Computational Investigation of Nanojet Formation Mechanism by Short Laser Pulse on a Metal Films.
ngphy002	Mr. Patrick Downes	Medical Physics simulations of radiotherapy machines
nmcom001	Mr. Damien Tully	Biomedical and computational analyses of cell-protein interactions with RNA viruses
nmlif001	Dr. Jennifer Commins	Ramble: The Evolution Simulator
nmlif002	Mr. Thomas Keane	Eukaryote Phylogeny
nmlif003	Dr. Davide Pisani	Methodological Aspects in the reconstruction of the tree of life
nmlif004	Dr. Gayle Philip	Tracing the Origin of Plasmodium falciparum genes
nmlif005	Mr. David McNally	Heat Shock Proteins in Prokaryotes
nmlif006	Dr. Simon Travers	Large scale analysis of inter-protein coevolution
nmphy001	Dr. Vladimir Yurchenko	Simulations of the Broadband HFI-100 Beams of the ESA Planck Telescope
tcast001	Dr. Brian Espey	Intelligent Software Analysis of Astronomical Spectra DBs
tcast002	Dr. Brian Espey	Understanding mass loss in stars like the Sun
tcche001	Dr. Isabel Rozas	Designing and modeling new catalysts for the Baylis-Hilman reaction
tclif001	Prof. Kenneth Wolfe	Assembling the genome sequence of the yeast Kluyveromyces polysporus
tcphy001	Dr. Sri Chaitanya Das Pemmaraju	Theoretical Studies into teh Ferromagnetism of Strongly Correlated Dilute Magnetic Semiconductors
tcphy002	Dr. Maria Stamenova	Current-driven geometric and magnetic rearrangements in spin-polarized point contacts
tcphy003	Dr. Stefan Hutzler	Numerical Studies of Granular Materials and Foams
tcphy004	Mr. Shane Magee	Simulated annealing of light nuclei in the Skyrme model
tcphy005	Mr. Andrew Wall	Electronic Properties of Doped Carbon Nanotubes
tcphy006	Prof. Stefano Sanvito	SPIN-ORBIT COUPLING IN MOLECULAR CHAINS, HETEROSTRUCTURES AND POINT CONTACTS
tcphy007	Mr. Alexandre Rocha	Transport properties of nanoscale devices
tcphy008	Mr. Ruairi Hanafin	Monte Carlo Simulations of donor impurity band exchange in dilute ferromagnetic oxides
tcphy009	Mr. Nicola Jean	Inelastic transport through atomic chains
tiche001	Dr. Damien Thompson	Simulation of molecular printboards for nanopatterning
tiche002	Dr. Jim Greer	Installation and test of MCCI
tieng001	Mr. Scott Monaghan	Energy Optimization and Molecular Dynamics Simulations on Interfacial Stacks of Silicon, Silica and Hafnium Silicates
tieng002	Dr. Michael Nolan	Modelling of the Electronic Properties of Novel Transparent Conducting Oxides
tiphy001	Dr. Simon Elliott	Large-scale, high-precision calculations of low-temperature magnetite
tiphy002	Dr. Geoffrey Stenuit	Electronic transport and vibrational properties in dilute nitrides
uceng001	Dr. Liam Marnane	Analysis of new Low Density Parity Check Codes
uclif001	Dr. Mary O'Connell	Evolution of Mammalian proteins
ulphy001	Dr. Zakia Rahman	Multi scale Modelling of Rare Earth Doped Nanowires