Publications 2006

2006 (33 articles)

A. Ciardi, S. V. Lebedev, A. Frank, E. G. Blackman, D. J. Ampleford, C. A. Jennings, J. P. Chittenden, T. Lery, S. N. Bland, S. C. Bott, G. N. Hall, J. Rapley, F. A. Suzuki Vidal, A. Marocchino, "3D MHD Simulations of Laboratory Plasma Jets", Astrophysics and Space Science, 307, 2006, 17-22, Source
A. Ciardi, S.V. Lebedev, A. Frank, E. G. Blackman, D. J. Ampleford, C. A. Jennings, J. P. Chittenden, T. Lery, S. N. Bland, S. C. Bott, G. N. Hall, J. Rapley, F. A. Suzuki Vidal, A. Marocchino, "3D MHD Simulations of Laboratory Plasma Jets", High Energy Density Laboratory Astrophysics, , 2006, 17-22, Source
A. M. Teweldeberhan, S. Fahy, "Effect of indium-nitrogen bonding on the localized vibrational mode inInyGa1−yNxAs1−x", Physical Review B, 73, 2006, , Source
A. R. Rocha, V. M. García-Suárez, S. Bailey, C. Lambert, J. Ferrer, S. Sanvito, "Spin and molecular electronics in atomically generated orbital landscapes", Physical Review B, 73, 2006, , Source
Ahmed M. El-Nahas, Joseph W. Bozzelli, John M. Simmie, Maria V. Navarro, Gráinne Black, Henry J. Curran, "Thermochemistry of Acetonyl and Related Radicals", The Journal of Physical Chemistry A, 110, 2006, 13618-13623, Source
Alessandro Vullo, Ian Walsh, Gianluca Pollastri, "A two-stage approach for improved prediction of residue contact maps", BMC Bioinformatics, 7, 2006, , Source
Anatoli Korkin, J. C. Greer, Gennadi Bersuker, Valentin V. Karasiev, Rodney J. Bartlett, "Computational design ofSi∕SiO2interfaces: Stress and strain on the atomic scale", Physical Review B, 73, 2006, , Source
Anatoli Korkin, Jim Greer, T. M. Hendersen, Gennadi Bersuker, Rodney Bartlett, "Oxygen Vacancies at the Si(001)/SiO2 Interface", ECS Transactions, 2, 2006, 205-211, Source
Anatoli Korkin, Rodney J. Bartlett, V. V. Karasiev, J. C. Greer, T. M. Henderson, Gennadi Bersuker, "Computational Design of Silicon Suboxides: Chemical and Mechanical Forces on the Atomic Scale", Journal of Computer-Aided Materials Design, 13, 2006, 185-200, Source
C. O’Reilly, S. Sanvito, F. M. F. Rhen, P. Stamenov, J. M. D. Coey, "Magnetization of electrodeposited nickel: Role of interstitial carbon", Journal of Applied Physics, 99, 2006, , Source
Cristián G. Sánchez, Maria Stamenova, Stefano Sanvito, D. R. Bowler, Andrew P. Horsfield, Tchavdar N. Todorov, "Molecular conduction: Do time-dependent simulations tell you more than the Landauer approach?", The Journal of Chemical Physics, 124, 2006, , Source
D. Thompson, J. A. Larsson, "Modeling Competitive Guest Binding to β-Cyclodextrin Molecular Printboards", The Journal of Physical Chemistry B, 110, 2006, 16640-16645, Source
Damien M. O’Halloran, David A. Fitzpatrick, Grace P. McCormack, James O. McInerney, Ann M. Burnell, "The Molecular Phylogeny of a Nematode-Specific Clade of Heterotrimeric G-Protein α-Subunit Genes", Journal of Molecular Evolution, 63, 2006, 87-94, Source
David A Fitzpatrick, Damien M O'Halloran, Ann M Burnell, "Multiple lineage specific expansions within the guanylyl cyclase gene family", BMC Evolutionary Biology, 6, 2006, , Source
David A Fitzpatrick, Mary E Logue, Jason E Stajich, Geraldine Butler, "A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis", BMC Evolutionary Biology, 6, 2006, 99, Source
G. Hallinan, A. Antonova, J. G. Doyle, S. Bourke, W. F. Brisken, A. Golden, "Rotational Modulation of the Radio Emission from the M9 Dwarf TVLM 513−46546: Broadband Coherent Emission at the Substellar Boundary?", The Astrophysical Journal, 653, 2006, 690-699, Source
Giorgos Fagas, Paul Delaney, James C. Greer, "Independent particle descriptions of tunneling using the many-body quantum transport approach", Physical Review B, 73, 2006, , Source
Ivan Rungger, Stefano Sanvito, "Ab initiostudy of the magnetostructural properties of MnAs", Physical Review B, 74, 2006, , Source
Javier Muñoz-García, Mario Castro, Rodolfo Cuerno, "Nonlinear Ripple Dynamics on Amorphous Surfaces Patterned by Ion Beam Sputtering", Physical Review Letters, 96, 2006, , Source
L Fernández-Seivane, M A Oliveira, S Sanvito, J Ferrer, "On-site approximation for spin–orbit coupling in linear combination of atomic orbitals density functional methods", Journal of Physics: Condensed Matter, 18, 2006, 7999-8013, Source
Laavanya Parthasarathi, Marc Devocelle, Chresten Søndergaard, Ivan Baran, Colm T. O'Dushlaine, Norman E. Davey, Richard J. Edwards, Niamh Moran, Dermot Kenny, Denis C. Shields, "Absolute Net Charge and the Biological Activity of Oligopeptides", Journal of Chemical Information and Modeling, 46, 2006, 2183-2190, Source
M E Dieckmann, L O'C Drury, P K Shukla, "On the ultrarelativistic two-stream instability, electrostatic turbulence and Brownian motion", New Journal of Physics, 8, 2006, 40-40, Source
M. E. Dieckmann, P. K. Shukla, L. O. C. Drury, "Particle-in-cell simulation studies of the non-linear evolution of ultrarelativistic two-stream instabilities", Monthly Notices of the Royal Astronomical Society, 367, 2006, 1072-1082, Source
Maria Stamenova, Sudhakar Sahoo, Cristián G. Sánchez, Tchavdar N. Todorov, Stefano Sanvito, "Magnetomechanical interplay in spin-polarized point contacts", Physical Review B, 73, 2006, , Source
Maxim V. Fedorov, Stephan Schumm, Jonathan M. Goodman, "Solvent Effects and Conformational Stability of a Tripeptide", Computational Life Sciences II, , 2006, 141-149, Source
Michael Nolan, Sean O'Callaghan, Giorgos Fagas, James C. Greer, Thomas Frauenheim, "Silicon Nanowire Band Gap Modification", Nano Letters, 7, 2006, 34-38, Source
Michael Nolan, Simon D. Elliott, "The p-type conduction mechanism in Cu2O: a first principles study", Physical Chemistry Chemical Physics, 8, 2006, 5350, Source
N. Jean, S. Sanvito, "Inelastic transport in molecular spin valves: Calculations using the tight-binding Su-Schrieffer-Heeger model", Physical Review B, 73, 2006, , Source
P. McDonnell, N. Harrison, D. O'Mahoney, P. McHugh, S. Lohfeld, "The use of rapid prototype models for investigation of failure mechanisms in trabecular bone", Journal of Biomechanics, 39, 2006, S12, Source
S. Wang, R. McGrath, T. Semmler, C. Sweeney, P. Nolan, "The impact of the climate change on discharge of Suir River Catchment (Ireland) under different climate scenarios", Natural Hazards and Earth System Sciences, 6, 2006, 387-395, Source
Shaun Mahony, Panayiotis V. Benos, Terry J. Smith, Aaron Golden, "Self-organizing neural networks to support the discovery of DNA-binding motifs", Neural Networks, 19, 2006, 950-962, Source
Thomas M Keane, Christopher J Creevey, Melissa M Pentony, Thomas J Naughton, James O Mclnerney, "Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified", BMC Evolutionary Biology, 6, 2006, , Source
W. Győrffy, Thomas M. Henderson, J. C. Greer, "Statistical estimates of electron correlations", The Journal of Chemical Physics, 125, 2006, , Source

Publications 2006

2006 (33 articles)

A. Ciardi, S. V. Lebedev, A. Frank, E. G. Blackman, D. J. Ampleford, C. A. Jennings, J. P. Chittenden, T. Lery, S. N. Bland, S. C. Bott, G. N. Hall, J. Rapley, F. A. Suzuki Vidal, A. Marocchino, "3D MHD Simulations of Laboratory Plasma Jets", Astrophysics and Space Science, 307, 2006, 17-22, Source

A. M. Teweldeberhan, S. Fahy, "Effect of indium-nitrogen bonding on the localized vibrational mode inInyGa1−yNxAs1−x", Physical Review B, 73, 2006, , Source

A. R. Rocha, V. M. García-Suárez, S. Bailey, C. Lambert, J. Ferrer, S. Sanvito, "Spin and molecular electronics in atomically generated orbital landscapes", Physical Review B, 73, 2006, , Source

Ahmed M. El-Nahas, Joseph W. Bozzelli, John M. Simmie, Maria V. Navarro, Gráinne Black, Henry J. Curran, "Thermochemistry of Acetonyl and Related Radicals", The Journal of Physical Chemistry A, 110, 2006, 13618-13623, Source

Alessandro Vullo, Ian Walsh, Gianluca Pollastri, "A two-stage approach for improved prediction of residue contact maps", BMC Bioinformatics, 7, 2006, , Source

Anatoli Korkin, J. C. Greer, Gennadi Bersuker, Valentin V. Karasiev, Rodney J. Bartlett, "Computational design ofSi∕SiO2interfaces: Stress and strain on the atomic scale", Physical Review B, 73, 2006, , Source

Anatoli Korkin, Jim Greer, T. M. Hendersen, Gennadi Bersuker, Rodney Bartlett, "Oxygen Vacancies at the Si(001)/SiO2 Interface", ECS Transactions, 2, 2006, 205-211, Source

Anatoli Korkin, Rodney J. Bartlett, V. V. Karasiev, J. C. Greer, T. M. Henderson, Gennadi Bersuker, "Computational Design of Silicon Suboxides: Chemical and Mechanical Forces on the Atomic Scale", Journal of Computer-Aided Materials Design, 13, 2006, 185-200, Source

C. O’Reilly, S. Sanvito, F. M. F. Rhen, P. Stamenov, J. M. D. Coey, "Magnetization of electrodeposited nickel: Role of interstitial carbon", Journal of Applied Physics, 99, 2006, , Source

Cristián G. Sánchez, Maria Stamenova, Stefano Sanvito, D. R. Bowler, Andrew P. Horsfield, Tchavdar N. Todorov, "Molecular conduction: Do time-dependent simulations tell you more than the Landauer approach?", The Journal of Chemical Physics, 124, 2006, , Source

D. Thompson, J. A. Larsson, "Modeling Competitive Guest Binding to β-Cyclodextrin Molecular Printboards", The Journal of Physical Chemistry B, 110, 2006, 16640-16645, Source

Damien M. O’Halloran, David A. Fitzpatrick, Grace P. McCormack, James O. McInerney, Ann M. Burnell, "The Molecular Phylogeny of a Nematode-Specific Clade of Heterotrimeric G-Protein α-Subunit Genes", Journal of Molecular Evolution, 63, 2006, 87-94, Source

David A Fitzpatrick, Damien M O'Halloran, Ann M Burnell, "Multiple lineage specific expansions within the guanylyl cyclase gene family", BMC Evolutionary Biology, 6, 2006, , Source

David A Fitzpatrick, Mary E Logue, Jason E Stajich, Geraldine Butler, "A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis", BMC Evolutionary Biology, 6, 2006, 99, Source

G. Hallinan, A. Antonova, J. G. Doyle, S. Bourke, W. F. Brisken, A. Golden, "Rotational Modulation of the Radio Emission from the M9 Dwarf TVLM 513−46546: Broadband Coherent Emission at the Substellar Boundary?", The Astrophysical Journal, 653, 2006, 690-699, Source

Giorgos Fagas, Paul Delaney, James C. Greer, "Independent particle descriptions of tunneling using the many-body quantum transport approach", Physical Review B, 73, 2006, , Source

Ivan Rungger, Stefano Sanvito, "Ab initiostudy of the magnetostructural properties of MnAs", Physical Review B, 74, 2006, , Source

Javier Muñoz-García, Mario Castro, Rodolfo Cuerno, "Nonlinear Ripple Dynamics on Amorphous Surfaces Patterned by Ion Beam Sputtering", Physical Review Letters, 96, 2006, , Source

L Fernández-Seivane, M A Oliveira, S Sanvito, J Ferrer, "On-site approximation for spin–orbit coupling in linear combination of atomic orbitals density functional methods", Journal of Physics: Condensed Matter, 18, 2006, 7999-8013, Source

M E Dieckmann, L O'C Drury, P K Shukla, "On the ultrarelativistic two-stream instability, electrostatic turbulence and Brownian motion", New Journal of Physics, 8, 2006, 40-40, Source

M. E. Dieckmann, P. K. Shukla, L. O. C. Drury, "Particle-in-cell simulation studies of the non-linear evolution of ultrarelativistic two-stream instabilities", Monthly Notices of the Royal Astronomical Society, 367, 2006, 1072-1082, Source

Maria Stamenova, Sudhakar Sahoo, Cristián G. Sánchez, Tchavdar N. Todorov, Stefano Sanvito, "Magnetomechanical interplay in spin-polarized point contacts", Physical Review B, 73, 2006, , Source

Maxim V. Fedorov, Stephan Schumm, Jonathan M. Goodman, "Solvent Effects and Conformational Stability of a Tripeptide", Computational Life Sciences II, , 2006, 141-149, Source

Michael Nolan, Sean O'Callaghan, Giorgos Fagas, James C. Greer, Thomas Frauenheim, "Silicon Nanowire Band Gap Modification", Nano Letters, 7, 2006, 34-38, Source

Michael Nolan, Simon D. Elliott, "The p-type conduction mechanism in Cu2O: a first principles study", Physical Chemistry Chemical Physics, 8, 2006, 5350, Source

N. Jean, S. Sanvito, "Inelastic transport in molecular spin valves: Calculations using the tight-binding Su-Schrieffer-Heeger model", Physical Review B, 73, 2006, , Source

P. McDonnell, N. Harrison, D. O'Mahoney, P. McHugh, S. Lohfeld, "The use of rapid prototype models for investigation of failure mechanisms in trabecular bone", Journal of Biomechanics, 39, 2006, S12, Source

S. Wang, R. McGrath, T. Semmler, C. Sweeney, P. Nolan, "The impact of the climate change on discharge of Suir River Catchment (Ireland) under different climate scenarios", Natural Hazards and Earth System Sciences, 6, 2006, 387-395, Source

Shaun Mahony, Panayiotis V. Benos, Terry J. Smith, Aaron Golden, "Self-organizing neural networks to support the discovery of DNA-binding motifs", Neural Networks, 19, 2006, 950-962, Source

Thomas M Keane, Christopher J Creevey, Melissa M Pentony, Thomas J Naughton, James O Mclnerney, "Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified", BMC Evolutionary Biology, 6, 2006, , Source

W. Győrffy, Thomas M. Henderson, J. C. Greer, "Statistical estimates of electron correlations", The Journal of Chemical Physics, 125, 2006, , Source

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